![]() ![]() If you use these tools successfully for your research please be so kind as to cite our work! The Sholl Analysis manuscript is accompanied by a Supplementary Note that presents the software in further detail. Var branchNumbers = skelResult.getBranches() įor (var i = 0 i < branchNumbers.SNT and Sholl Analysis are based on publications. Var branchLengths = skelResult.getAverageBranchLength() Var shortestPaths = skelResult.getShortestPathList().toArray() Var skelResult = n(AnalyzeSkeleton_.NONE, false, true, null, true, false) run(int pruneIndex, boolean pruneEnds, boolean shortPath, ImagePlus origIP, boolean silent, boolean verbose) (work on a copy of the ImagePlus if you don't want it displayed) Var imp = IJ.getImage() // get current open image That's useful if you want to use the results within the script without the user being annoyed by a lot of results tables popping up. ![]() You can use AnalyzeSkeleton from scripts without displaying any of the results. Using the 3D_Viewer libraries we can easily display the results of both, the skeletonization and the analysis:īat cochlea volume rendered in the viewer with its corresponding classified skeletonĪnalyzeSkeleton functionalities can also be called from scripts, making use of its library methods or performing the whole analysis in silent mode.
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